Drug-Drug Interaction Analysis

Drug-Drug Interaction Analysis

Drug-drug interactions (DDIs) occur when the pharmacokinetic (PK) or pharmacodynamic properties of a drug are altered by the co-administration of another therapeutic agent. These interactions can lead to diminished efficacy or increased toxicity, significantly impacting the success rate of drug discovery. Therefore, early-stage DDI analysis is essential to predict potential risks involving absorption, distribution, metabolism, and excretion (ADME). BOC Sciences offers a comprehensive suite of in vitro DDI assessment services, focusing on enzyme inhibition/induction and transporter interactions. We utilize high-quality biological systems, including liver microsomes and hepatocytes, to deliver precise data that helps researchers optimize lead compounds, delineate metabolic pathways, and mitigate liability risks in the drug development pipeline.

BOC Sciences DDI Analysis Services

CYP450 Inhibition & Induction

We evaluate the potential of test compounds to inhibit or induce major Cytochrome P450 (CYP) isoforms. Our services include IC50 determination, time-dependent inhibition (TDI) assessment, and mRNA expression analysis in hepatocytes, helping you predict metabolic bottlenecks early in R&D.

Transporter Interaction Studies

Our team assesses substrate and inhibition profiles against key drug transporters (e.g., P-gp, BCRP, OATP, OCT, OAT). By utilizing polarized cell monolayers and vesicle systems, we clarify drug absorption mechanisms and potential transporter-mediated interactions affecting tissue distribution.

Reaction Phenotyping

We identify the specific enzymes responsible for the metabolism of your drug candidate. Using recombinant enzymes and specific chemical inhibitors, we determine the fractional contribution of each pathway, enabling a clear understanding of metabolic clearance mechanisms.

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BOC Sciences delivers high-throughput DDI screening and mechanistic studies to accelerate your lead optimization and candidate selection process.

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Advanced Methods for DDI Assessment

CYP Inhibition Assay

Reversible CYP Inhibition

  • IC50 Determination: Evaluation of direct inhibition potential across major CYP isoforms (1A2, 2B6, 2C8, 2C9, 2C19, 2D6, 3A4).
  • Ki Determination: Identification of inhibition type (competitive, non-competitive, or mixed) for positive hits.
  • Cocktail Substrate Assay: High-throughput screening using probe substrates for simultaneous isoform assessment.
Time-Dependent Inhibition

Time-Dependent Inhibition (TDI)

  • IC50 Shift Assay: Comparison of IC50 values with and without NADPH pre-incubation (30 min) to detect metabolism-dependent inhibition.
  • Kinact / KI Determination: Kinetic characterization of mechanism-based inactivation (MBI) to predict DDI risks.
  • Reversibility Check: Assessment of inhibition persistence via dialysis or dilution methods.
Enzyme Induction Assay

CYP Enzyme Induction

  • mRNA Expression (RT-PCR): Quantification of CYP1A2, 2B6, and 3A4 induction via AhR, CAR, and PXR pathways in primary hepatocytes.
  • Enzymatic Activity Assay: Measurement of functional protein activity using specific probe substrates (e.g., Testosterone for CYP3A4).
  • Cytotoxicity Control: Concurrent measurement of cell viability (ATP or LDH) to ensure data integrity.
Reaction Phenotyping

Reaction Phenotyping

  • Recombinant CYP Screening: Identification of metabolizing enzymes using a panel of cDNA-expressed human CYP450s (rCYPs).
  • Chemical Inhibition: Determination of the fraction metabolized (fm) using isoform-specific inhibitors in liver microsomes.
  • Correlation Analysis: Linking metabolic rates to marker substrate activities across individual donor liver lots.
Efflux Transporter Assay

Permeability & Efflux Transporters

  • Bidirectional Transport (Caco-2/MDCK): Assessment of Papp (A-to-B / B-to-A) and Efflux Ratio (ER) to identify P-gp or BCRP substrates.
  • Inhibition Assay (IC50): Evaluation of test compound inhibition against P-gp (MDR1) and BCRP transporters using reference substrates.
  • Mechanistic Studies: Confirmation of transporter involvement using specific chemical inhibitors (e.g., Zosuquidar, Ko143).
SLC Transporter Assay

SLC Uptake Transporters

  • Uptake Inhibition (HEK293/CHO): IC50 determination for hepatic (OATP1B1, OATP1B3) and renal (OAT1, OAT3, OCT2) transporters.
  • Substrate Assessment: Comparison of cellular uptake in transfected vs. wild-type cells to identify if the drug is a transporter substrate.
  • MATE Transporter Assay: Evaluation of MATE1 and MATE2-K inhibition for renal clearance interaction prediction.

Supported Compounds for DDI Studies

BOC Sciences supports the evaluation of diverse therapeutic modalities, tailoring assay conditions to the physicochemical properties of your molecules.

Small Molecules

  • Lead compounds
  • Fragment libraries
  • Reference standards
  • Metabolites
  • PROTACs

Biologics & Peptides

  • Peptide therapeutics
  • Antibody-Drug Conjugates (ADCs)
  • Cyclic peptides
  • Oligonucleotides
  • Fusion proteins

Formulations & Mixtures

  • Co-formulated drugs
  • Natural product extracts
  • Excipient mixtures
  • Early-stage formulations

Custom DDI Screening – Project Consultation

Submit your compound details, and our ADME experts will design a targeted DDI testing strategy to support your lead selection and optimization.

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BOC Sciences DDI Analysis Workflow

Requirement Analysis

1Consultation & Strategy

We review your compound's properties and intended therapeutic area to recommend relevant CYP isoforms and transporters for screening.

Protocol Design

2Assay Design & Setup

Selection of appropriate test systems (microsomes, hepatocytes, cell lines), concentration ranges, and control inhibitors to ensure robust data.

Assay Execution

3Experimental Execution

High-precision liquid handling and LC-MS/MS bioanalysis are performed to measure parent drug depletion or metabolite formation accurately.

Data Reporting

4Data Analysis & Report

Calculation of kinetic parameters (IC50, Ki, Km, Vmax). We deliver a detailed scientific report with actionable insights for your R&D team.

DDI Solutions for Drug Discovery & Development

01

Solution for Early Discovery Screening

For discovery teams needing to rank large compound libraries rapidly, we provide high-throughput CYP inhibition and metabolic stability screening. Our simplified protocols (e.g., single-point % inhibition or abbreviated IC50) offer fast turnaround times, enabling you to identify DDI liabilities and "fail fast" before investing in extensive characterization.

02

Solution for Lead Optimization

We support medicinal chemistry teams by establishing robust Structure-Activity Relationships (SAR) regarding metabolic interactions. By providing precise IC50 shifts (TDI) and transporter substrate data, we help chemists identify metabolic soft spots and design analogs with improved safety profiles and reduced interaction potential.

03

Solution for Complex Modalities (ADCs & PROTACs)

Beyond small molecules, we offer specialized DDI strategies for Antibody-Drug Conjugates (ADCs) and PROTACs. We assess the interaction potential of released cytotoxic payloads, linkers, and unique degraders, tailoring assay conditions to account for stability, solubility, and non-standard metabolic pathways involved in these novel modalities.

04

Solution for Mechanistic Investigation

When routine assays flag a risk, our expert team conducts deep-dive mechanistic studies to contextualize the data. Whether determining Kinact/KI for time-dependent inhibition or distinguishing between transporter substrates and inhibitors, we provide the detailed kinetic parameters needed to build accurate prediction models.

Mitigate Risks with Expert DDI Analysis!

Partner with BOC Sciences to uncover the metabolic profile of your candidates. Our reliable in vitro data empowers you to make informed decisions, minimize attrition, and accelerate your path through the drug development pipeline.

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Why Choose BOC Sciences for DDI Studies?

Comprehensive Assay Portfolio

We cover the full spectrum of ADME targets, including major CYP isoforms, Phase II enzymes (UGTs), and a wide array of uptake and efflux transporters, providing a holistic view of interaction potential.

High-Sensitivity Bioanalysis

Equipped with advanced LC-MS/MS systems, we achieve superior sensitivity and selectivity, allowing for the accurate quantification of trace metabolites and parent compounds even in complex biological matrices.

Flexible Experimental Design

Unlike rigid standard panels, we offer customizable assay conditions (incubation times, protein concentrations, probe substrates) tailored to the specific metabolic stability and properties of your molecule.

Scientific Expertise

Our team consists of biochemists with deep expertise in enzyme kinetics. We don't just provide raw numbers; we offer interpretation of Ki, Kinact, and fm values to help contextually evaluate DDI risks.

Application of Drug–Drug Interaction Evaluation

Metabolic Stability

  • Microsomal Stability
  • Hepatocyte Stability
  • Plasma Stability
  • Metabolite Identification

Permeability & Absorption

  • PAMPA Assay
  • Caco-2 Permeability
  • LogD/LogP Determination
  • Solubility Testing

Physicochemical Profiling

  • Plasma Protein Binding
  • Blood-to-Plasma Ratio
  • pKa Determination
  • Chemical Stability

DDI Analysis Case Studies

Client Needs: A biotech client identified a promising heterocyclic compound but observed non-linear pharmacokinetics in preliminary rodent studies. They suspected mechanism-based inhibition (MBI) of CYP3A4.

Challenges: Standard reversible inhibition assays (IC50 shift) were inconclusive due to high non-specific binding. The client needed a definitive assessment of time-dependent inhibition to decide whether to proceed with the scaffold.

Solution: BOC Sciences implemented a rigorous two-step dilution method to effectively distinguish between reversible binding and true inactivation. We optimized protein concentrations to minimize non-specific binding and performed kinetics experiments with multiple pre-incubation time points (0–30 min). This allowed for the precise determination of KI and Kinact values, providing a quantitative measure of the inactivation rate.

Outcome: The study confirmed significant time-dependent inhibition. Based on the kinetic parameters, the client prioritized a backup series with a modified core structure, successfully eliminating the MBI liability while retaining potency.

Client Needs: A pharmaceutical company observed poor oral bioavailability for a highly soluble peptide-mimetic and suspected it was a substrate for intestinal efflux transporters.

Challenges: The compound had low permeability and high adsorption tendencies, making it difficult to distinguish between passive diffusion limitations and active efflux. Data from their internal assay was noisy and unreproducible.

Solution: We optimized the Caco-2 monolayer assay by verifying tight junction integrity with Lucifer Yellow and conducting a mass balance assessment to account for compound loss. We utilized a specific inhibitor panel (Zosuquidar for P-gp, Ko143 for BCRP) in a bidirectional transport setup. This controlled approach allowed us to calculate a definitive Efflux Ratio (ER) and confirm the specific transporter involvement without ambiguity.

Outcome: Data revealed a high Efflux Ratio (>10) that was significantly reduced by P-gp inhibitors but not BCRP inhibitors. The client used this data to guide the design of prodrugs that bypassed P-gp recognition, improving bioavailability.

Client Needs: To support the selection of a final candidate, a client needed to understand the metabolic clearance pathway of a new molecular entity (NME) to predict potential interactions with common co-medications.

Challenges: The compound was metabolized by multiple enzymes. The client needed to quantify the fractional contribution (fm) of each CYP isoform to assess if the drug was a "victim" for strong CYP inhibitors.

Solution: BOC Sciences adopted a cross-validation strategy combining two independent methods. First, we screened a panel of cDNA-expressed recombinant human CYPs (rCYPs) to identify capable enzymes. Second, we validated these findings in Human Liver Microsomes (HLM) using isoform-selective chemical inhibitors. By applying Relative Activity Factors (RAFs) scaling, we calculated the precise contribution of each pathway.

Outcome: We established that CYP2C9 was the primary clearance pathway (fm > 80%). This crucial information allowed the client to flag potential risks with CYP2C9 inhibitors early in the development strategy.

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