Degradation Product Analysis

Degradation Product Analysis

During drug development, Active Pharmaceutical Ingredients (APIs) and formulations are exposed to various stress factors—such as heat, light, pH, oxidation, and humidity—which can lead to chemical instability. Understanding the resulting degradation products is essential for optimizing molecular structures, selecting appropriate excipients, and ensuring the safety of research materials. BOC Sciences offers comprehensive degradation product analysis services to identify, isolate, and characterize impurities formed under storage, processing, or simulated physiological conditions. Utilizing advanced mass spectrometry (HRMS) and NMR technologies, we help clients elucidate complex degradation pathways, differentiate between process impurities and degradants, and provide data-driven insights to accelerate lead optimization and formulation development.

BOC Sciences Degradation Analysis Services

Degradation Product Identification

We provide definitive structural answers for unknown peaks appearing in your chromatography, converting data into chemical knowledge.

  • Unknown Impurity Profiling: Determination of elemental composition and molecular weight for trace-level degradants.
  • Isomeric Differentiation: Distinguishing between stereoisomers and positional isomers using advanced spectroscopy.
  • Structural Elucidation: Full connectivity assignment for complex degradation products.

Pathway & Mechanism Elucidation

We go beyond "what" to answer "how" and "why," mapping the chemical journey from parent molecule to final degradant.

  • Reaction Kinetics Modeling: Calculation of degradation rates, half-lives, and activation energies.
  • Mechanism Proposal: Detailed mapping of hydrolysis, oxidation, or rearrangement pathways.
  • Intermediate Trapping: Detection of transient species to validate proposed reaction routes.

Biodegradability Assessment

Evaluating how materials and molecules break down under biological influence, crucial for environmental fate and drug delivery design.

  • Enzymatic Stability Testing: Assessing resistance or susceptibility to specific metabolic enzymes (e.g., esterases).
  • Microbial Degradation: Monitoring breakdown by environmental or physiological microbiota.
  • Metabolite Identification: Tracking biologically generated transformation products.

Abiotic Degradation Analysis

Quantifying the impact of physical and chemical factors on molecular integrity, independent of biological systems.

  • Photostability Profiling: Identifying light-sensitive moieties and characterizing photolytic products.
  • Hydrolytic Kinetics: pH-rate profiling to determine stability windows in aqueous media.
  • Thermal Oxidation: Assessing susceptibility to heat-induced oxidative pathways.

Forced Degradation (Stress Testing)

Proactive stress testing to predict stability liabilities and identify "soft spots" in your molecule's structure.

  • Predictive Stressing: Harsh condition testing (Acid/Base/Peroxide) to forecast long-term stability issues.
  • Solid-State Stress: Evaluation of humidity and heat effects on crystal forms and chemical purity.
  • Mass Balance Evaluation: Verifying that the loss of parent compound correlates with the formation of degradants.

Process-Specific Product Analysis

Targeted analysis of degradation occurring during specific manufacturing or experimental workflows.

  • Sterilization Byproducts: Analysis of degradation caused by gamma irradiation or autoclaving.
  • Reaction Side-Products: Identification of impurities formed during synthesis scale-up.
  • Excipient Compatibility: Detecting degradation arising from specific API-excipient interactions.
Need to Identify an Unknown Impurity?

BOC Sciences specializes in solving complex structural puzzles. Our experts utilize state-of-the-art spectroscopy to characterize degradation products rapidly.

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Advanced Technologies for Structural Characterization

UPLC-MS Analysis

UPLC/HPLC-PDA-MS

Ultra-Performance Liquid Chromatography coupled with Photo-Diode Array and Mass Spectrometry is our primary tool for separating complex mixtures and obtaining preliminary UV spectral and molecular weight data for degradants.

HRMS Q-TOF

High-Resolution MS (Q-TOF/Orbitrap)

To determine the exact elemental composition of degradation products, we employ HRMS. Accurate mass measurements allow us to propose molecular formulas and fragmentation patterns with high confidence.

NMR Spectroscopy

NMR Spectroscopy (1D & 2D)

For definitive structural confirmation, particularly for isomers, we use high-field NMR (up to 600 MHz). Techniques like NOESY and HMBC help determine the precise location of degradation modifications.

Preparative HPLC

Preparative HPLC Isolation

When on-line characterization is insufficient, we scale up separation using Prep-LC to collect mg-quantities of the impurity. This enriched material is essential for detailed NMR analysis and reference standard generation.

Solid State Analysis

Vibrational Spectroscopy (FTIR/Raman)

For solid-state degradation (e.g., polymorphism changes or solid-state hydrolysis), we utilize FTIR and Raman spectroscopy to observe changes in functional groups and crystal lattice environments without dissolution.

GC-MS Analysis

Headspace GC-MS

We employ Gas Chromatography-Mass Spectrometry to analyze volatile degradation products, providing insights into solvent interactions, oxidation byproducts, or small molecule cleavage fragments.

Supported Samples for Degradation Profiling

BOC Sciences accepts a wide variety of matrices, helping clients understand stability across the entire discovery and development spectrum.

Small Molecule Candidates

  • New Chemical Entities (NCEs)
  • Key Intermediates
  • Reference Standards
  • Chiral Compounds
  • Process Impurities

Biologics & Peptides

  • Synthetic Peptides (Deamidation/Oxidation)
  • Antibody-Drug Conjugates (Linker Stability)
  • Oligonucleotides
  • Fusion Proteins
  • Aggregation Products

Complex Matrices

  • Solid Oral Formulations (Tablets/Capsules)
  • Liquid Formulations & Suspensions
  • Lipid Nanoparticles (LNPs)
  • Simulated Gastric/Intestinal Fluids
  • Polymer-Drug Conjugates

Solve Your Stability Challenges Today

Send us your chromatograms or samples. Our structural chemistry experts are ready to design a degradation study tailored to your compound's unique properties.

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Degradation Analysis & Impurity ID Workflow

Project Consultation

1Consultation & Strategy Design

We review your existing data (structures, chromatograms). Our chemists propose a stress testing protocol or an isolation strategy best suited for your target impurities.

Stress Testing and Isolation

2Stress Testing / Sample Enrichment

We perform forced degradation or utilize your degraded samples. Using Prep-LC, we enrich and isolate the specific degradation products of interest for characterization.

Instrumental Analysis

3Structural Characterization

Isolated compounds undergo comprehensive analysis using HRMS (MS/MS fragmentation) and multi-dimensional NMR to determine connectivity and stereochemistry.

Report Delivery

4Data Interpretation & Report

We deliver a detailed structural elucidation report, including proposed structures, degradation mechanisms, and raw spectral data to support your R&D decisions.

Tailored Solutions for Diverse Partners

01

For Innovative Biotech Startups

Speed and capital efficiency are vital for early-stage ventures. We act as your virtual analytical laboratory, providing rapid forced degradation studies to identify molecular "soft spots" immediately. Our data packages are designed to quickly de-risk lead candidates and support robust intellectual property filings without the need for heavy internal infrastructure investment.

02

For Pharmaceutical R&D Teams

We serve as a specialized extension of your internal capabilities, tackling the "cold cases" that standard workflows cannot resolve. When you face ambiguous isomeric impurities or trace-level degradants that stall projects, our expert team utilizes advanced orthogonal spectroscopy (high-field 2D-NMR) to provide definitive structural elucidation for your most challenging molecules.

03

For CDMOs & Process Chemists

We support scale-up efforts by mapping the fate of impurities throughout the synthetic route. Our real-time analysis identifies reaction byproducts and degradation triggered by processing conditions (e.g., heat, pH), enabling you to refine purification steps, validate cleaning protocols, and ensure batch-to-batch consistency for your clients.

04

For Formulation Scientists

We offer specialized testing for complex matrices, from solid oral dosages to LNPs. We go beyond the API to analyze API-excipient interactions (e.g., Maillard reactions) and degradation within the final drug product, guiding you to select the most compatible buffers, carriers, and packaging materials for long-term shelf stability.

Accelerate Your R&D with Precise Structural Data!

Don't let unknown impurities stall your project. Partner with BOC Sciences for expert degradation product analysis. We turn undefined peaks into actionable structural information, ensuring your development moves forward with confidence.

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Why Choose BOC Sciences for Impurity Analysis?

Expert Structural Elucidation Team

Our team consists of PhD-level chemists with extensive experience in natural product chemistry and impurity profiling, capable of solving the most challenging structural puzzles without relying solely on library matching.

High-End Instrumentation Platform

We operate advanced analytical platforms including Q-TOF, Orbitrap MS, and 600 MHz NMR with cryoprobes, ensuring sensitivity for trace-level degradants (often <0.1%).

Integrated Isolation Capabilities

Unlike standard analytical labs, we seamlessly integrate Prep-LC and semi-prep fractionation. We don't just detect the impurity; we isolate enough of it to perform definitive 2D-NMR characterization.

Mechanistic Insight

We provide more than just data; we offer chemical logic. Our reports explain the degradation mechanisms, helping you understand the root cause of instability in your storage or formulation environment.

Applications in Drug Research & Development

Early Discovery

  • Liability Profiling of Hits
  • Scaffold Stability Assessment
  • Solubility-Stability Correlation
  • Metabolic Soft-Spot ID

Formulation R&D

  • API-Excipient Interaction Study
  • Photostability Evaluation
  • Liquid Formulation Shelf-Life
  • Packaging Compatibility

Process Development

  • Impurity Fate Mapping
  • Reaction Byproduct ID
  • Genotoxic Impurity Screening
  • Scale-Up Consistency Checks

Degradation Analysis Case Studies

Client Needs: A client developing a lipid-based formulation observed an unknown impurity increasing over time at 4°C. They needed to identify the structure to understand if it was a hydrolysis product or an oxidative byproduct.

Challenges: The impurity was present at very low levels (0.2%) and was structurally very similar to the parent lipid, making separation difficult. Standard LC-MS provided inconclusive fragmentation patterns due to the aliphatic nature of the chain.

Solution: BOC Sciences implemented a multi-dimensional approach, employing orthogonal chromatography for effective sample enrichment followed by advanced high-resolution MS/MS analysis. To achieve definitive structural assignment, we utilized specialized 2D-NMR pulse sequences (including COSY and HMBC), which pinpointed the exact location of the oxidative modification on the unsaturated fatty acid chain with high precision.

Outcome: We identified the degradation mechanism as auto-oxidation. The client was able to add a specific antioxidant to the formulation, effectively halting the degradation and saving the formulation candidate.

Client Needs: A promising lead compound showed yellowing upon exposure to ambient light. The client required a rapid assessment of the photoproducts to determine if the chromophore could be modified.

Challenges: The photoproducts were unstable and reverted to the parent compound during standard rotary evaporation, making isolation tricky.

Solution: Leveraging our specialized flow-chemistry platform, we established an online LC-Photo-MS system to capture and characterize the elusive transient species in real-time. To prevent reversion during isolation, we executed a rapid, cold-temperature purification protocol, successfully obtaining stable material for comprehensive structural validation via cryogenic NMR spectroscopy.

Outcome: The structure of a photocyclized product was elucidated. The medicinal chemistry team modified a specific substituent on the aromatic ring, significantly improving light stability without losing potency.

Client Needs: During accelerated stability testing of a solid dosage form, a new peak appeared. The client suspected an interaction with the lactose filler (Maillard reaction) but lacked proof.

Challenges: The matrix was complex, containing multiple excipients. The degradation product was highly polar and not retained on standard C18 columns.

Solution: Addressing the polarity challenge, our experts developed a robust HILIC (Hydrophilic Interaction Liquid Chromatography) method to successfully retain and separate the polar degradant. Subsequent high-accuracy Q-TOF MS analysis identified a distinct mass shift, providing unequivocal evidence of a glycosylamine adduct formed through the specific API-lactose interaction.

Outcome: Confirmed the formation of a Maillard reaction product. The client switched to an anhydrous excipient (Mannitol), resolving the instability issue for the next batch production.

Frequently Asked Questions

Frequently Asked Questions

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Client Reviews: Degradation Analysis

Expert Services Supporting Impurity Study

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